Craniodental characters and the relationships of Procyonidae (Mammalia: Carnivora)

Recent phylogenies of Procyonidae based on molecular data differ significantly from previous morphology‐based phylogenies in all generic sister taxon relationships. I have compiled the most comprehensive dataset of craniodental morphology that incorporates previous morphological characters, and with the aid of high‐resolution X‐ray computed tomography, new characters. This expanded craniodental analysis is based on 78 characters and yields new phylogenetic results regarding the ingroup relationships of Procyonidae. These results include Bassariscus astutus as the least derived member of Procyonidae and Ailurus fulgens nested well within the clade. Additionally, there are some similarities to previous morphological analyses of Procyonidae. Although the characters used to unite and diagnose Procyonidae vary depending on the phylogenetic analysis and have ambiguous taxonomic distribution amongst both Procyonidae and Musteloidea, there is significant morphological support for clades within Procyonidae. In addition to the strength of the morphological support within the clade, the disparate topographical regions of the skull from which the characters are derived may indicate that these synapomorphies are indeed the result of homology rather than adaptive convergence, as suggested by analyses based on molecular data. © 2012 The Linnean Society of London, Zoological Journal of the Linnean Society, 2012, 164 , 669–713.     

Lack of Mother—Offspring Relationships in White-Tailed Deer Capture Groups

ABSTRACT Behavioral studies of white-tailed deer (Odocoileus virginianus) often assign mother-offspring relationships based on common capture of juveniles with adult deer, assuming that fawns associate closely with mothers. We tested this assumption using genetic parentage to assess mother-offspring relationships within capture groups based on data from 10 polymorphic microsatellite loci. At the 80% confidence level, we assigned maternity to 43% and 51% of juveniles captured with an adult female in 2 respective study areas. Capture with their mother did not differ by sex of juveniles in either study area, and limiting our analysis to capture groups that most represent family groups (i.e., one ad F with 1–3 juv) did not increase maternity assignment (35%). Our results indicate that common capture may be a poor indicator of mother-offspring relationships in many field settings. We recommend genetic verification of family relationships.     

Photobiological properties of the inhibition of etiolated Arabidopsis seedling growth by ultraviolet-B irradiation

Alteration of 'normal' levels of ultraviolet-B light (UV-B, 280–320 nm) can affect plant chemical composition as well as growth; however, little is known about how plants perceive UV-B light. We have carried out fluence response curves, and demonstrated that the growth inhibition of etiolated Arabidopsis thaliana seedlings by low fluence UV light is specific to UV-B and not UV-A (320–390 nm). The response shows reciprocity between duration and intensity, at least over a limited range, and thus depends only on photon fluence and not on photon flux. The action spectrum for this response indicates a peak of maximum effectiveness at 290 nm, and response spectra at different fluences indicate that the most effective wavelength at 30 000  µ mol m^–2 is 290 nm, whereas 300 nm light was the most effective at 100 000  µ mol m^–2. This response occurs in mutant seedlings deficient in cryptochrome, phytochrome or phototropin, suggesting that none of the known photoreceptors is the major UV-B photoreceptor. Some null mutants in DNA repair enzymes show hypersensitivity to UV-B, suggesting that even at low fluence rates, direct damage to DNA may be one component of the response to UV-B.     

Influence of typhoons on annual CO2 flux from a subtropical, humic lake

The Intergovernmental Panel on Climate Change predicts dramatic changes in precipitation patterns over the next century. One potential method for inferring how these changes in annual precipitation and intensity of storm events will influence aquatic ecosystems is to study and model present-day lakes that share climatic characteristics with future climate scenarios. A small lake in north-central Taiwan provided an excellent opportunity to explore the influence of intense meteorological events on CO₂ exchange between surface waters and the atmosphere. Each year Yuan Yang Lake (YYL) is influenced by multiple typhoons that pass near the island of Taiwan. This lake has been instrumented with a sensor network that monitors water column and meteorological parameters at a high temporal resolution (2–10 min intervals). Using this high-resolution data and manually collected CO₂ samples, a mass-balance model of CO₂ dynamics in YYL was developed. In addition, a generalized simulation model was used to explore how typhoon frequency, intensity, and timing impact CO₂ efflux to the atmosphere. Our findings suggest that increased annual precipitation and frequency of storm events results in greater epilimnetic interaction with the watershed and hypolimnion. These interactions resulted in elevated epilimetic CO₂ concentrations and therefore greater evasion of CO₂ to the atmosphere.     

Exoenzyme activities as indicators of dissolved organic matter composition in the hyporheic zone of a floodplain river

1. We measured the hyporheic microbial exoenzyme activities in a floodplain river to determine whether dissolved organic matter (DOM) bioavailability varied with overlying riparian vegetation patch structure or position along flowpaths. 2. Particulate organic matter (POM), dissolved organic carbon (DOC), dissolved oxygen (DO), electrical conductivity and temperature were sampled from wells in a riparian terrace on the Queets River, Washington, U.S.A. on 25 March, 15 May, 20 July and 09 October 1999. Dissolved nitrate, ammonium and soluble reactive phosphorus were also collected on 20 July and 09 October 1999. Wells were characterised by their associated overlying vegetation: bare cobble/young alder, mid‐aged alder (8–20 years) and old alder/old‐growth conifer (25 to >100 years). POM was analysed for the ash‐free dry mass and the activities of eight exoenzymes (α‐glucosidase, β‐glucosidase, β ‐N‐acetylglucosaminidase, xylosidase, phosphatase, leucine aminopeptidase, esterase and endopeptidase) using fluorogenic substrates. 3. Exoenzyme activities in the Queets River hyporheic zone indicated the presence of an active microbial community metabolising a diverse array of organic molecules. Individual exoenzyme activity (mean ± standard error) ranged from 0.507 ± 0.1547 to 22.8 ± 5.69 μmol MUF (g AFDM)^?1 h^?1, was highly variable among wells and varied seasonally, with the lowest rates occurring in March. Exoenzyme activities were weakly correlated with DO, DOC and inorganic nutrient concentrations. 4. Ratios of leucine aminopeptidase : β‐glucosidase were low in March, May and October and high in July, potentially indicating a switch from polysaccharides to proteins as the dominant component of microbial metabolism. 5. Principal components analysis indicated that there were patch effects and that these effects were strongest in the summer. 6. DOM degradation patterns did not change systematically along hyporheic flowpaths but varied with overlying forest patch type in the Queets River hyporheic zone, suggesting that additional carbon inputs exist. We hypothesise that the most likely input is the downward movement of DOM from overlying riparian soils. Understanding this movement of DOM from soils to subsurface water is essential for understanding both the hyporheic metabolism and the carbon budget of streams and rivers.     

Population genetic analysis of a recent range expansion: mechanisms regulating the poleward range limit in the volcano barnacle Tetraclita rubescens

As range shifts coincident with climate change have become increasingly well documented, efforts to describe the causes of range boundaries have increased. Three mechanisms—genetic impoverishment, migration load, or a physical barrier to dispersal—are well described theoretically, but the data needed to distinguish among them have rarely been collected. We describe the distribution, abundance, genetic variation, and environment of Tetraclita rubescens, an intertidal barnacle that expanded its northern range limit by several hundreds of kilometres from San Francisco, CA, USA, since the 1970s. We compare geographic variation in abundance with abiotic and biotic patterns, including sea surface temperatures and the distributions of 387 co‐occurring species, and describe genetic variation in cytochrome c oxidase subunit I, mitochondrial noncoding region, and nine microsatellite loci from 27 locations between Bahia Magdalena (California Baja Sur, Mexico) and Cape Mendocino (CA, USA). We find very high gene flow, high genetic diversity, and a gradient in physical environmental variation coincident with the range limit. We infer that the primary cause of the northern range boundary in T. rubescens is migration load arising from flow of maladapted alleles into peripheral locations and that environmental change, which could have reduced selection against genotypes immigrating into the newly colonized portion of the range, is the most likely cause of the observed range expansion. Because environmental change could similarly affect all taxa in a region whose distributional limits are established by migration load, these mechanisms may be common causes of range boundaries and largely synchronous multi‐species range expansions.     

Use of TLC‐FID and GC‐MS/FID to examine the effects of migratory state,diet and captivity on preen wax composition in White‐throated Sparrows Zonotrichia albicollis

Preen wax is important for plumage maintenance and other functions. Its chemical composition is complex, and separating and quantifying its components, commonly by gas chromatography (GC), can be challenging. We present a simple analytical system consisting of thin‐layer chromatography/flame ionization detection (TLC‐FID) using a solvent system of 100% toluene to analyse the complex compound classes present in preen wax. We used GC and TLC‐FID to investigate the effects of migratory status, diet and captivity on the preen wax composition of White‐throated Sparrows Zonotrichia albicollis, and to measure the quantity of preen wax on the head, primary and tail feathers. White‐throated Sparrows produced preen wax containing only monoesters regardless of migratory state. The monoesters contained several isomers consisting of homologous series of fatty alcohols (C10–C20) and fatty acids (C13–C19) esterified together in different combinations to form monoesters with total carbon numbers ranging from C23 to C38. Weighted average monoester carbon number was greater in captive birds than in wild birds and was greater in captives fed a formulated diet enriched with sesame oil than in birds fed the same diet enriched with fish oil. Captivity and migratory state also affected the complexity of the mixture of monoesters. There was significantly more preen wax on head feathers compared with primary and tail feathers. We suggest that among its many functions, preen wax may play a role in drag reduction by affecting the physical properties of feathers, and/or the fluid flow at their surfaces.     

Use and misuse of the IUCN Red List Criteria in projecting climate change impacts on biodiversity

Recent attempts at projecting climate change impacts on biodiversity have used the IUCN Red List Criteria to obtain estimates of extinction rates based on projected range shifts. In these studies, the Criteria are often misapplied, potentially introducing substantial bias and uncertainty. These misapplications include arbitrary changes to temporal and spatial scales; confusion of the spatial variables; and assume a linear relationship between abundance and range area. Using the IUCN Red List Criteria to identify which species are threatened by climate change presents special problems and uncertainties, especially for shorter‐lived species. Responses of most species to future climate change are not understood well enough to estimate extinction risks based solely on climate change scenarios and projections of shifts and/or reductions in range areas. One way to further such understanding would be to analyze the interactions among habitat shifts, landscape structure and demography for a number of species, using a combination of models. Evaluating the patterns in the results might allow the development of guidelines for assigning species to threat categories, based on a combination of life history parameters, characteristics of the landscapes in which they live, and projected range changes.     

Dwindling pollen resources trigger the transition to broodless populations of long-lived honeybees each autumn

Abstract.  1. Each autumn in northern regions, honeybee colonies shift from populations of short-lived workers that actively rear brood to broodless populations of long-lived winter bees. To determine if dwindling pollen resources trigger this transition, the natural disappearance of external pollen resources was artificially accelerated or delayed and colonies were monitored for effects on the decline in brood-rearing activity and the development of populations of long-lived winter bees.
2. Delaying the disappearance of pollen resources postponed the decline in brood rearing in colonies. Colonies with an extended supply of pollen reared workers longer into October before brood rearing ended than control colonies or colonies for which pollen supply was cut short artificially in autumn.
3. Colonies with extended pollen supply produced more workers throughout autumn than colonies with less pollen, but the development of the population of long-lived winter bees was delayed until relatively later in autumn. Colonies produced similar numbers of winter bees, regardless of the timing of the disappearance of pollen resources.
4. Mean longevity of autumn-reared workers was inversely related to the amount of brood remaining to be reared in colonies when workers eclosed. Consequently, long-lived workers did not appear in colonies until brood rearing declined, which in turn was controlled by the availability of pollen.
5. Dwindling pollen resources provide a powerful cue that initiates the transition to populations of broodless winter bees because it directly affects the brood-rearing capacity of colonies and indirectly indicates deteriorating environmental conditions associated with the approach of winter.